Dna-Directed RNA Polymerase Beta' Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dna-Directed RNA Polymerase Beta' Chain
  Conformer 1
(PDB)
2auk (D)
  Conformer 2
(PDB)
2auk (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 102 1.13   86 - 187
2 77 0.89   9 - 85

Sequence


           _______________________________________________________________________________82_______________________________________ 
 2auk(D) : *****AESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLV 
         :                                                                                                                          
 2auk(E) : SHMAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLV 
           _______________________________________________________________________________82_______________________________________ 

           ____________________________________________________________________                                                     
 2auk(D) : VLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQES                                                     
         :                                                                                                                          
 2auk(E) : VLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQES                                                     
           ____________________________________________________________________                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.2
Translation
(A)
-0.1
Closure
(%)
50.4
Bending Residues
( green )
  82 - 86
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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