Ferric Iron Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ferric Iron Binding Protein
  Conformer 1
(PDB)
1mrp  
  Conformer 2
(PDB)
1nnf (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 158 0.89   84 - 87   102 - 225   277 - 306
2 146 0.45   3 - 83   88 - 101   226 - 276

Sequence


           _______________________________________________________________________________81_________________101___________________ 
 1mrp    : DITVYNGQHKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPISEQTIQQTAQKGVPLAPKKDWIALSGRSRVVVYDHTKLSEKDMEKS 
         :                                                                                                                          
 1nnf(A) : DITVYNGQQKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPISEQTIQQTAQKGVPLAPKKDWIALSGRSRVVVYDHTKLSEKDMEKS 
           _______________________________________________________________________________81_________________101___________________ 

           ______________________________________________________________________________________________________225_______________ 
 1mrp    : VLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALNWLKGLKENGKLYAKNSVALQAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQA 
         :                                                                                                                          
 1nnf(A) : VLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALNWLKGLKENGKLYAKNSVALQAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQA 
           ______________________________________________________________________________________________________225_______________ 

           ________________________________275__________________________________                                                    
 1mrp    : EAQKFVDFLASKKGQEALVAARAEYPLRADVVSPFNLEPYEKLEAPVVSATTAQDKEHAIKLIEEAGLK                                                    
         :                                                                                                                          
 1nnf(A) : EAQKFVDFLASKKGQEALVAARAEYPLRADVVSPFNLEPYEKLEAPVVSATTAQDKEHAIKLIEEAGL*                                                    
           ________________________________275__________________________________                                                    

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
21.9
Translation
(A)
0.2
Closure
(%)
79.0
Bending Residues
( green )
  81 - 88
  101 - 102
  225 - 229
  275 - 280
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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