Fibrinogen Beta Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fibrinogen Beta Chain
  Conformer 1
(PDB) 		1m1j (B)
  Conformer 2
(PDB) 		1m1j (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 346 0.5   116 - 461
2 51 0.46   65 - 115

Sequence


           _______________________________________________112______________________________________________________________________ 
 1m1j(B) : IYPDAGGCKHPLDELGVLCPTGCELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHK 
         :                                                                                                                          
 1m1j(E) : IYPDAGGCKHPLDELGVLCPTGCELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHK 
           _______________________________________________112______________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1m1j(B) : KIQKLENAIATQTDYCRSPCVASCNIPVVSGRECEDIYRKGGETSEMYIIQPDPFTTPYRVYCDMETDNGGWTLIQNRQDGSVNFGRAWDEYKRGFGNIAKSGGKKYCDTPGEYWLGNDK 
         :                                                                                                                          
 1m1j(E) : KIQKLENAIATQTDYCRSPCVASCNIPVVSGRECEDIYRKGGETSEMYIIQPDPFTTPYRVYCDMETDNGGWTLIQNRQDGSVNFGRAWDEYKRGFGNIAKSGGKKYCDTPGEYWLGNDK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1m1j(B) : ISQLTKIGPTKVLIEMEDWNGDKVSALYGGFTIHNEGNKYQLSVSNYKGNAGNALMEGASQLYGENRTMTIHNGMYFSTYDRDNDGWLTTDPRKQCSKEDGGGWWYNRCHAANPNGRYYW 
         :                                                                                                                          
 1m1j(E) : ISQLTKIGPTKVLIEMEDWNGDKVSALYGGFTIHNEGNKYQLSVSNYKGNAGNALMEGASQLYGENRTMTIHNGMYFSTYDRDNDGWLTTDPRKQCSKEDGGGWWYNRCHAANPNGRYYW 
           ________________________________________________________________________________________________________________________ 

           __________________________________________                                                                               
 1m1j(B) : GGTYSWDMAKHGTDDGIVWMNWKGSWYSMKKMSMKIKPYFPD                                                                               
         :                                                                                                                          
 1m1j(E) : GGTYSWDMAKHGTDDGIVWMNWKGSWYSMKKMSMKIKPYFP*                                                                               
           __________________________________________                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.5
Translation
(A) 		0.2
Closure
(%) 		49.6
Bending Residues
( green ) 		  112 - 118
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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