Ig Gamma-2a Chain C Region

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ig Gamma-2a Chain C Region
  Conformer 1
(PDB)
1i1c (A)
  Conformer 2
(PDB)
1i1c (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 103 0.55   339 - 441
2 98 0.02   241 - 338

Sequence


           _________________________________________________________________________________________________338____________________ 
 1i1c(A) : SVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEM 
         :                                                                                                                          
 1i1c(B) : SVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEM 
           _________________________________________________________________________________________________338____________________ 

           _____________________________________________________________________________________                                    
 1i1c(A) : TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLENEHTEKSLSH                                    
         :                                                                                                                          
 1i1c(B) : TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLENEHTEKSLSH                                    
           _____________________________________________________________________________________                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
23.3
Translation
(A)
0.1
Closure
(%)
32.6
Bending Residues
( green )
  338 - 343
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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