33 Kda Chaperonin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 33 Kda Chaperonin
  Conformer 1
(PDB)
1vzy (A)
  Conformer 2
(PDB)
1vzy (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 234 0.93   3 - 236
2 46 0.85   237 - 282

Sequence


           ________________________________________________________________________________________________________________________ 
 1vzy(A) : MDYLVKALAYDGKVRAYAARTTDMVNEGQRRHGTWPTASAALGRTMTASLMLGAMLKGDDKLTVKIEGGGPIGAIVADANAKGEVRAYVSNPQVHFDLNAAGKLDVRRAVGTNGTLSVVK 
         :                                                                                                                          
 1vzy(B) : MDYLVKALAYDGKVRAYAARTTDMVNEGQRRHGTWPTASAALGRTMTASLMLGAMLKGDDKLTVKIEGGGPIGAIVADANAKGEVRAYVSNPQVHFDLNAAGKLDVRRAVGTNGTLSVVK 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________________________________236____ 
 1vzy(A) : DLGLREFFTGQVEIVSGELGDDFTYYLVSSEQVPSSVGVGVLVNPDNTILAAGGFIIQLMPGTDDETITKIEQRLSQVEPISKLIQKGLTPEEILEEVLGEKPEILETMPVRFHCPCSKE 
         :                                                                                                                          
 1vzy(B) : DLGLREFFTGQVEIVSGELGDDFTYYLVSSEQVPSSVGVGVLVNPDNTILAAGGFIIQLMPGTDDETITKIEQRLSQVEPISKLIQKGLTPEEILEEVLGEKPEILETMPVRFHCPCSKE 
           _________________________________________________________________________________________________________________236____ 

           __________________________________________________                                                                       
 1vzy(A) : RFETAILGLGKKEIQDMIEEDGQAEAVCHFCNEKYLFTKEELEGLRDQTT                                                                       
         :                                                                                                                          
 1vzy(B) : RFETAILGLGKKEIQDMIEEDGQAEAVCHFCNEKYLFTKEELEGLR****                                                                       
           __________________________________________________                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.2
Translation
(A)
0.1
Closure
(%)
87.5
Bending Residues
( green )
  236 - 237
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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