Kinesin-Like Protein Kif1a

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Kinesin-Like Protein Kif1a
  Conformer 1
(PDB)
1i5s (A)
  Conformer 2
(PDB)
1vfv (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 278 1.48   7 - 274   318 - 349
2 29 2.61   275 - 317

Sequence


           ________________________________________________________________________________________________________________________ 
 1i5s(A) : *ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQL 
         :                                                                                                                          
 1vfv(A) : GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1i5s(A) : CEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 
         :                                                                                                                          
 1vfv(A) : CEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTV-------tSSRSHAVFNIIFTQKRHDAETNITTEKVS 
           ________________________________________________________________________________________________________________________ 

           ________________________274__________________________317_____________________________________________                    
 1i5s(A) : KISLVDLAGSERAkGTRLKEGANINKSLTTLGKVISALAEMDiPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK**********                    
         :                                                                                                                          
 1vfv(A) : KISLVDLAGSE----------aNINKSLTTLGKVISALAEMfIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH                    
           ________________________274__________________________317_____________________________________________                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
23.1
Translation
(A)
-0.8
Closure
(%)
68.9
Bending Residues
( green )
  274 - 275
  317 - 318
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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