Lysr-Type Regulatory Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lysr-Type Regulatory Protein
  Conformer 1
(PDB)
1iz1 (B)
  Conformer 2
(PDB)
1ixc (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 218 0.74   68 - 287
2 62 0.63   4 - 67

Sequence


           _________________________________________________________________67_____________________________________________________ 
 1iz1(B) : MEFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTA 
         :                                                                                                                          
 1ixc(B) : *EFRQLKYFIAVAEAGN-aAAAKRLHVSQPPITRQ-qALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTA 
           _________________________________________________________________67_____________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1iz1(B) : TVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGAASS 
         :                                                                                                                          
 1ixc(B) : TVSLTH-tKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALT-aGAASS 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________                                                                   
 1iz1(B) : IVPASVAAIRWPDIAFARIVGTRVKVPISCIFRKEKQPPILARFVEHVRRSAKD                                                                   
         :                                                                                                                          
 1ixc(B) : IVPASVAAIRWPDIAFARIVGTRVKVPISCIFRKEKQPPILARFVEHVR*****                                                                   
           ______________________________________________________                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.7
Translation
(A)
0.1
Closure
(%)
21.2
Bending Residues
( green )
  67 - 68
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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