Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Kinase
  Conformer 1
(PDB)
1dvr (A)
  Conformer 2
(PDB)
2rgx (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 154 1.89   7 - 33   73 - 75   86 - 216
2 44 2.33   34 - 72   76 - 85

Sequence


           _______________________________33_____________________________________72_75_____________________________________________ 
 1dvr(A) : SSESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILV-GFPRTIPQAEKLDQMLKEQGTPLEKAIELK 
         :                                                                                                                          
 2rgx(A) : ****MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVF---P--KHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFE 
           _______________________________29_____________________________________68_71_____________________________________________ 

           _____________________________________________________________________________________________________                    
 1dvr(A) : VDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGKN                    
         :                                                                                                                          
 2rgx(A) : VPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVK-------VIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG**                    
           _____________________________________________________________________________________________________                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
35.1
Translation
(A)
0.0
Closure
(%)
99.6
Bending Residues
( green )
  33 - 34
  72 - 73
  75 - 88
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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