Antibody M41

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Antibody M41
  Conformer 1
(PDB)
1gpo (L)
  Conformer 2
(PDB)
1acy (L)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 110 0.61   12 - 12   85 - 87   109 - 214
2 101 0.97   3 - 11   13 - 84   88 - 108

Sequence


           _________11_______________________________________________________________________84_____________________108____________ 
 1gpo(L) : DIELTQSPATLSVTPGNSVSISCRASQSLVNEDGNTYLFWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDLAVYFCQQITDWPFTFGGGTKLEIKRADAAPTV 
         :                                                                                                                          
 1acy(L) : DIVMTQSPASLVVSLGQRATISCRASES-VDSYGKSFMHWYQQKPGQPPKVLIYIASNLESGVPARFSGSGSRTDFTLTIDPVEADDAATYYCQQNNEDPPTFGAGTKLEMRRADAAPTV 
           _________11_______________________________________________________________________79_____________________103____________ 

           ________________________________________________________________________________________________                         
 1gpo(L) : SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR                         
         :                                                                                                                          
 1acy(L) : SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR                         
           ________________________________________________________________________________________________                         

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.4
Translation
(A)
0.9
Closure
(%)
86.2
Bending Residues
( green )
  11 - 13
  84 - 88
  108 - 109
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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