Aspartate Aminotransferase (E.C.2.6.1.1)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartate Aminotransferase (E.C.2.6.1.1)
  Conformer 1
(PDB)
9aat (A)
  Conformer 2
(PDB)
2cst (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 314 1.29   35 - 36   40 - 334   338 - 345   352 - 360   388 - 389   400 - 403
2 71 1.06   17 - 34   37 - 39   335 - 337   346 - 351   361 - 387   390 - 399   404 - 408

Sequence


           _______________________________34_______________________________________________________________________________________ 
 9aat(A) : *SSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK-KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQR 
         :                                                                                                                          
 2cst(A) : AASIFAAVPRAPPVAVFKLTADFREDGDSRKVNLGVGAYRTDEGQPWVLPVVRKVEQLIAGDGSLNHEYLPILGLPEFRANASRIALGDDSPAIAQKRVGSVQGLGGTGALRIGAEFLRR 
           _______________________________34_______________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 9aat(A) : FFKFSRD----VYLPKPSWGNHTPIFRDAGLQ-LQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALR 
         :                                                                                                                          
 2cst(A) : WYNGNNNTATPVYVSSPTWENHNSVFMDAGFKDIRTYRYWDAAKRGLDLQGLLDDMEKAPEFSIFILHACAHNPTGTDPTPDEWKQIAAVMKRRCLFPFFDSAYQGFASGSLDKDAWAVR 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________________334_______344____351______360_ 
 9aat(A) : HFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFC 
         :                                                                                                                          
 2cst(A) : YFVSEGFELFCAQSFSKNFGLYNERVGNLSVVGKDEDNVQRVLSQMEKIVRTTWSNPPSQGARIVATTLTSPQLFAEWKDNVKTMADRVLLMRSELRSRLESLGTPGTWNHITDQIGMFS 
           __________________________________________________________________________________________334_______344____351______360_ 

           _______________________387_________399_403_________                                                                      
 9aat(A) : FTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQ-VTK**                                                                      
         :                                                                                                                          
 2cst(A) : FTGLNPKQVEYMIKEKHIYLMASGRINMCGLTTKNLDYVAKSIHEAVTKIQ                                                                      
           _______________________387_________399_403_________                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.9
Translation
(A)
-0.3
Closure
(%)
91.9
Bending Residues
( green )
  34 - 40
  334 - 335
  337 - 338
  344 - 349
  351 - 352
  360 - 361
  387 - 390
  399 - 400
  403 - 404
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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