Atpase Inhibitor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atpase Inhibitor
  Conformer 1
(PDB)
1gmj (B)
  Conformer 2
(PDB)
1gmj (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 29 0.46   48 - 76
2 26 0.38   22 - 47

Sequence


           __________________________47________________________________                                                             
 1gmj(B) : GAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ                                                             
         :                                                                                                                          
 1gmj(C) : GAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLK*                                                             
           __________________________47________________________________                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
21.8
Translation
(A)
0.3
Closure
(%)
100.0
Bending Residues
( green )
  47 - 48
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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