Atp-Dependent Clp Protease Atp-Binding Subunit Clpx

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent Clp Protease Atp-Binding Subunit Clpx
  Conformer 1
(PDB)
3hws (B)
  Conformer 2
(PDB)
3hws (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 197 1.6   65 - 315
2 96 0.71   316 - 411

Sequence


           ________________________________________________________________________________________________________________________ 
 3hws(B) : SALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIV 
         :                                                                                                                          
 3hws(C) : *ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT------gKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIV 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________________________315______________ 
 3hws(B) : YIDQIDKISR----------eGVQQALLKLIEGTrKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETaSEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEP 
         :                                                                                                                          
 3hws(C) : YIDQIDKISRnPSITRDVSGEGVQQALLKLIEGT-------VlQVDTSKILFICGGAFAGLDKVISHRV---sEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEP 
           _______________________________________________________________________________________________________315______________ 

           _____________________________________________________________________________________                                    
 3hws(B) : KNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIYG                                    
         :                                                                                                                          
 3hws(C) : KNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIY*                                    
           _____________________________________________________________________________________                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
81.9
Translation
(A)
-2.3
Closure
(%)
0.6
Bending Residues
( green )
  315 - 319
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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