Avermectin-Sensitive Glutamate-Gated Chloride Channel Glucl Alpha

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Avermectin-Sensitive Glutamate-Gated Chloride Channel Glucl Alpha
  Conformer 1
(PDB)
4tnw (B)
  Conformer 2
(PDB)
4tnv (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 222 0.98   3 - 130   142 - 221   268 - 281   336 - 338
2 111 0.83   131 - 141   222 - 267   282 - 335

Sequence


           ________________________________________________________________________________________________________________________ 
 4tnw(B) : SDSKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLY 
         :                                                                                                                          
 4tnv(B) : SDSKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHT---pNVLIRIHNDGTVLY 
           ________________________________________________________________________________________________________________________ 

           _______130________141_____________________________________________________________________________221___________________ 
 4tnw(B) : SVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRT 
         :                                                                                                                          
 4tnv(B) : SVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRT 
           _______130________141_____________________________________________________________________________221___________________ 

           ____________________263_______________281___________________________________________________335______                    
 4tnw(B) : AIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFFVFNILYWSRFGHH                    
         :                                                                                                                          
 4tnv(B) : AIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFFVFNILYWSRFGH*                    
           ____________________263_______________281___________________________________________________335______                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.8
Translation
(A)
0.0
Closure
(%)
9.6
Bending Residues
( green )
  130 - 131
  141 - 142
  221 - 222
  263 - 269
  281 - 282
  335 - 336
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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