Beta-Lactamase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Lactamase
  Conformer 1
(PDB)
4y0o (A)
  Conformer 2
(PDB)
4y0u (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 214 0.31   42 - 103   124 - 276
2 20 0.39   104 - 123

Sequence


           _____________________________________________________________102__________________123___________________________________ 
 4y0o(A) : SIIDQNVQALFNEISADAVFVTYDGQNIKKYGTHLDRAKTAYIPASTFiANALIGLENHKATSTEIFKWDGKPRFFKAWDKDFTLGEAMQASTVPVYQELARRIGPSLMQSELQRIGYGN 
         :                                                                                                                          
 4y0u(A) : SIIDQNVQALFNEISADAVFVTYDGQNIKKYGTHLDRAKTAYIPASTFiANALIGLENHKATSTEIFKWDGKPRFFKAWDKDFTLGEAMQASTVPVYQELARRIGPSLMQSELQRIGYGN 
           _____________________________________________________________102__________________123___________________________________ 

           ________________________________________________________________________________________________________________________ 
 4y0o(A) : MQIGTEVDQFWLKGPLTITPIQEVKFVYDLAQGQLPFKPEVQQQVKEMLYVERRGENRLYAKSGWGMAVDPQVGWYVGFVEKADGQVVAFALNMQMKAGDDIALRKQLSLDVLDKLGVFH 
         :                                                                                                                          
 4y0u(A) : MQIGTEVDQFWLKGPLTITPIQEVKFVYDLAQGQLPFKPEVQQQVKEMLYVERRGENRLYAKSGWGMAVDPQVGWYVGFVEKADGQVVAFALNMQMKAGDDIALRKQLSLDVLDKLGVFH 
           ________________________________________________________________________________________________________________________ 

           __                                                                                                                       
 4y0o(A) : YL                                                                                                                       
         :                                                                                                                          
 4y0u(A) : YL                                                                                                                       
           __                                                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.8
Translation
(A)
0.2
Closure
(%)
99.3
Bending Residues
( green )
  102 - 104
  123 - 127
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

Download and extract PyMOL PML script file Download