Bifunctional P-450/nadph-P450 Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bifunctional P-450/nadph-P450 Reductase
  Conformer 1
(PDB)
4kf2 (A)
  Conformer 2
(PDB)
4hgf (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 414 0.64   5 - 6   19 - 39   48 - 453
2 20 0.48   7 - 18   40 - 47

Sequence


           ___5___________18___________________39______47__________________________________________________________________________ 
 4kf2(A) : *KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFFGDGLVTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVD 
         :                                                                                                                          
 4hgf(B) : IKEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFAGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVD 
           ___5___________18___________________39______47__________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4kf2(A) : IAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDEAMNKLQRAdDPAYDENKRQFQEDIKVMNDLVDKIIADRKAS--qSDDLLTHMLNGKDP 
         :                                                                                                                          
 4hgf(B) : IAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDEKM-----------dENKRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLAHMLNGKDP 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4kf2(A) : ETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRD 
         :                                                                                                                          
 4hgf(B) : ETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRD 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________                           
 4kf2(A) : KTIWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPLGG                           
         :                                                                                                                          
 4hgf(B) : KTIWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPL**                           
           ______________________________________________________________________________________________                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.5
Translation
(A)
0.5
Closure
(%)
65.7
Bending Residues
( green )
  5 - 8
  18 - 25
  39 - 40
  47 - 49
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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