Bovine Mitochondrial F1-Atpase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bovine Mitochondrial F1-Atpase
  Conformer 1
(PDB)
1e1q (G)
  Conformer 2
(PDB)
1h8e (G)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 98 0.81   3 - 250
2 20 0.24   251 - 270

Sequence


           ________________________________________________________________________________________________________________________ 
 1e1q(G) : ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVY-----------------------lCGAIHSSVAKQMK--------------------------------------- 
         :                                                                                                                          
 1h8e(G) : ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIlIIGVSSDRGLCGAIHSSVAKQMKSEAANLkEVKIIGVGDKIRSILHtFKEVGRRPPTFGDAS 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________________250__________________ 
 1e1q(G) : ------------------------------------------------------------lANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISG 
         :                                                                                                                          
 1h8e(G) : VIALELLNeGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISG 
           ___________________________________________________________________________________________________250__________________ 

           ____                                                                                                                     
 1e1q(G) : AAAL                                                                                                                     
         :                                                                                                                          
 1h8e(G) : AAAL                                                                                                                     
           ____                                                                                                                     

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.5
Translation
(A)
-0.2
Closure
(%)
27.4
Bending Residues
( green )
  250 - 252
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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