Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
1mxe (A)
  Conformer 2
(PDB)
1mxe (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 84 0.23   8 - 76   112 - 126
2 41 0.15   89 - 111   127 - 144

Sequence


           _______________________________________________________________________76________________________________111____________ 
 1mxe(A) : LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 
         :                                                                                                                          
 1mxe(B) : LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 
           _______________________________________________________________________76________________________________111____________ 

           126_____________________                                                                                                 
 1mxe(A) : MIREADIDGDGQVNYEEFVTMMTS                                                                                                 
         :                                                                                                                          
 1mxe(B) : MIREADIDGDGQVNYEEFVTMMTS                                                                                                 
           126_____________________                                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.2
Translation
(A)
0.0
Closure
(%)
71.9
Bending Residues
( green )
  76 - 89
  111 - 112
  126 - 127
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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