Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
1cll (A)
  Conformer 2
(PDB)
3g43 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 76 2.13   6 - 81
2 64 0.83   82 - 145

Sequence


           ________________________________________________________________________76______________________________________________ 
 1cll(A) : *LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD 
         :                                                                                                                          
 3g43(D) : QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD 
           ________________________________________________________________________76______________________________________________ 

           __________________________                                                                                               
 1cll(A) : EMIREADIDGDGQVNYEEFVQMMTA*                                                                                               
         :                                                                                                                          
 3g43(D) : EMIREADIDGDGQVNYEEFVQMMTAK                                                                                               
           __________________________                                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
178.6
Translation
(A)
1.9
Closure
(%)
59.5
Bending Residues
( green )
  76 - 82
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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