Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit
  Conformer 1
(PDB)
1u7e (A)
  Conformer 2
(PDB)
1j3h (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 225 0.64   13 - 33   93 - 105   124 - 316
2 87 0.96   34 - 92   106 - 123   339 - 348

Sequence


           _______________________33_________________________________________________________92__________105_______________123_____ 
 1u7e(A) : **EQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM 
         :                                                                                                                          
 1j3h(A) : GSEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEM 
           _______________________33_________________________________________________________92__________105_______________123_____ 

           ________________________________________________________________________________________________________________________ 
 1u7e(A) : FSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWlAGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 
         :                                                                                                                          
 1j3h(A) : FSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWl-gTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________316_________________________________                     
 1u7e(A) : IVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRViNEKCGKEFTEF                     
         :                                                                                                                          
 1j3h(A) : IVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKF----------dYEEEEIRViNEKCGKEFTEF                     
           ________________________________________________________________316_________________________________                     

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
19.7
Translation
(A)
0.6
Closure
(%)
93.5
Bending Residues
( green )
  33 - 34
  92 - 97
  105 - 106
  123 - 125
  316 - 339
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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