Capsular Polysaccharide Synthesis Enzyme Cap8e

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Capsular Polysaccharide Synthesis Enzyme Cap8e
  Conformer 1
(PDB)
3w1v (A)
  Conformer 2
(PDB)
3vvc (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 232 1.05   2 - 165   196 - 198   202 - 224   227 - 234   260 - 313
2 82 1.12   166 - 195   199 - 201   225 - 226   235 - 259   314 - 335

Sequence


           ________________________________________________________________________________________________________________________ 
 3w1v(A) : GLVPRGSAMGFDDKILLITGGTGSFGNAVMKRFLDSNIKEIRIFSRDEKKQDDIRKKYNNSKLKFYIGDVRDSQSVETAMRDVDYVFHAAALKQVPSCEFFPVEAVKTNIIGTENVLQSA 
         :                                                                                                                          
 3vvc(A) : ********MGFDDKILLITGGTGSFGNAVMKRFLDSNIKEIRIFSRDEKKQDDIRKKYNNSKLKFYIGDVRDSQSVETAMRDVDYVFHAAALKQVPSCEFFPVEAVKTNIIGTENVLQSA 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________165___________________________195___201____________________224_______ 
 3w1v(A) : IHQNVKKVICLSTDKAAYPINAMGISKAMMEKVFVAKSRNIRSEQTLICGTRYGNVMASRGSVIPLFIDKIKAGEPLTITDPDMTRFLMSLEDAVELVVHAFKHAETGDIMVQKAPSSTV 
         :                                                                                                                          
 3vvc(A) : IHQNVKKVICLSTDEAAYPINAMGISKAMMEKVFVAKSRNIRSEQTLICGTRYGNVMASRGSVIPLFIDKIKAGEPLTITDPDMTRFLMSLEDAVELVVHAFKHAETGDIMVQKAPSSTV 
           ___________________________________________________165___________________________195___201____________________224_______ 

           234__________________255_______________________________________________________313_________________________              
 3w1v(A) : GDLATALLELFEADNAIEIIGTRHGEKKAETLLTREEYAQCEDMGDYFRVPADSRDLNYSNYVETGNEKITQSYEYNSDNTHILTVEEIKEKLLTLEYVRNELNDYK              
         :                                                                                                                          
 3vvc(A) : GDLATALLELFEADNAIEIIGTRHGEKKAETLLTREEYAQCEDMGDYFRVPAD--------------------yEYNSDNTHILTVEEIKEKLLTLEYVRNELNDY*              
           234__________________255_______________________________________________________313_________________________              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.2
Translation
(A)
-0.3
Closure
(%)
89.0
Bending Residues
( green )
  165 - 166
  195 - 196
  198 - 199
  201 - 202
  224 - 227
  234 - 235
  255 - 263
  313 - 314
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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