D-Glyceraldehyde-3-Phosphate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Glyceraldehyde-3-Phosphate Dehydrogenase
  Conformer 1
(PDB)
1gad (P)
  Conformer 2
(PDB)
1gad (O)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 168 0.17   47 - 50   150 - 312   314 - 314
2 150 0.23   6 - 46   51 - 149   313 - 313   315 - 324

Sequence


           ____________________________________________46__50______________________________________________________________________ 
 1gad(P) : TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG 
         :                                                                                                                          
 1gad(O) : TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG 
           ____________________________________________46__50______________________________________________________________________ 

           __________________________149___________________________________________________________________________________________ 
 1gad(P) : PSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 
         :                                                                                                                          
 1gad(O) : PSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 
           __________________________149___________________________________________________________________________________________ 

           _____________________________________________________________________312__________________                               
 1gad(P) : DLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK                               
         :                                                                                                                          
 1gad(O) : DLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK                               
           _____________________________________________________________________312__________________                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
1.9
Translation
(A)
0.1
Closure
(%)
59.5
Bending Residues
( green )
  46 - 47
  50 - 51
  149 - 152
  312 - 316
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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