Dihydrodipicolinate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrodipicolinate Reductase
  Conformer 1
(PDB)
1yl7 (A)
  Conformer 2
(PDB)
1yl5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 130 0.56   3 - 105   217 - 243
2 111 0.52   106 - 216

Sequence


           ________________________________________________________________________________________________________105_____________ 
 1yl7(A) : **ARVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQ 
         :                                                                                                                          
 1yl5(A) : AMARVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQ 
           ________________________________________________________________________________________________________105_____________ 

           ___________________________________________________________________________________________212__________________________ 
 1yl7(A) : AARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLTVGL 
         :                                                                                                                          
 1yl5(A) : AARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLTVGL 
           ___________________________________________________________________________________________212__________________________ 

           _______                                                                                                                  
 1yl7(A) : EPLLDLH                                                                                                                  
         :                                                                                                                          
 1yl5(A) : EPLLDLH                                                                                                                  
           _______                                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.6
Translation
(A)
1.0
Closure
(%)
65.5
Bending Residues
( green )
  105 - 107
  212 - 219
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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