D-Maltodextrin-Binding Protein 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Maltodextrin-Binding Protein 3
  Conformer 1
(PDB)
1omp  
  Conformer 2
(PDB)
3mbp  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 204 0.69   111 - 259   313 - 329   331 - 368
2 161 0.42   4 - 110   260 - 312   330 - 330

Sequence


           _________________________________________________________________________________________________________108____________ 
 1omp    : KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD 
         :                                                                                                                          
 3mbp    : KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD 
           _________________________________________________________________________________________________________108____________ 

           ________________________________________________________________________________________________________________________ 
 1omp    : LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV 
         :                                                                                                                          
 3mbp    : LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV 
           ________________________________________________________________________________________________________________________ 

           ______________257___________________________________________________311____________326__________________________________ 
 1omp    : NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEA 
         :                                                                                                                          
 3mbp    : NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEA 
           ______________257___________________________________________________311____________326__________________________________ 

           __________                                                                                                               
 1omp    : LKDAQTRITK                                                                                                               
         :                                                                                                                          
 3mbp    : LKDAQTRITK                                                                                                               
           __________                                                                                                               

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
34.8
Translation
(A)
-0.7
Closure
(%)
98.3
Bending Residues
( green )
  108 - 113
  257 - 261
  311 - 317
  326 - 332
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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