DNA Topoisomerase II, Alpha Isozyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Topoisomerase II, Alpha Isozyme
  Conformer 1
(PDB)
1zxm (A)
  Conformer 2
(PDB)
1zxn (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 243 0.68   31 - 264   269 - 288
2 103 0.53   265 - 268   289 - 402

Sequence


           ________________________________________________________________________________________________________________________ 
 1zxm(A) : SVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTS 
         :                                                                                                                          
 1zxn(A) : SVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTS 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________________________________264_268 
 1zxm(A) : SNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPVKGFR 
         :                                                                                                                          
 1zxn(A) : SNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPVKGFR 
           _________________________________________________________________________________________________________________264_268 

           ______288_______________________________________________________________________________________________________________ 
 1zxm(A) : SYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNaVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTC 
         :                                                                                                                          
 1zxn(A) : SYVDMYLK-----------vIHEQVNHRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLV-----------hQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTC 
           ______288_______________________________________________________________________________________________________________ 

           ____________________________                                                                                             
 1zxm(A) : QLSEKFIKAAIGC***************                                                                                             
         :                                                                                                                          
 1zxn(A) : QLSEKFIKAAIGiVESILNWVKFKAQVQ                                                                                             
           ____________________________                                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.3
Translation
(A)
0.4
Closure
(%)
51.0
Bending Residues
( green )
  264 - 265
  268 - 269
  288 - 289
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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