Elongation Factor G

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor G
  Conformer 1
(PDB)
1fnm (A)
  Conformer 2
(PDB)
1elo (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 395 2.04   10 - 125   130 - 153   160 - 437   450 - 450   452 - 460   463 - 479
2 227 1.45   126 - 129   154 - 159   438 - 449   451 - 451   461 - 462   480 - 684

Sequence


           __________________________________________________________________________________________125_129_____________________15 
 1fnm(A) : *EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIaVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRT 
         :                                                                                                                          
 1elo(A) : VEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIaVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRT 
           __________________________________________________________________________________________125_129_____________________15 

           3___159_________________________________________________________________________________________________________________ 
 1fnm(A) : MQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLL 
         :                                                                                                                          
 1elo(A) : MQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLL 
           3___159_________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1fnm(A) : LDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGE 
         :                                                                                                                          
 1elo(A) : LDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGE 
           ________________________________________________________________________________________________________________________ 

           __________________________________________437_________________457___________________479_________________________________ 
 1fnm(A) : DAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKI 
         :                                                                                                                          
 1elo(A) : DAPRVIL---------iDVAIEPK--------sQALARLAEEDPTFRVSTHP---qTIISGMGELHLEIIVDRLKREF-----vGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKI 
           __________________________________________437_________________457___________________479_________________________________ 

           ________________________________________________________________________________________________________________________ 
 1fnm(A) : KVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQIL 
         :                                                                                                                          
 1elo(A) : KVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQIL 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________                                                                
 1fnm(A) : GMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI*                                                                
         :                                                                                                                          
 1elo(A) : GMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLIK                                                                
           _________________________________________________________                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.6
Translation
(A)
1.4
Closure
(%)
69.2
Bending Residues
( green )
  125 - 126
  129 - 130
  153 - 154
  159 - 160
  437 - 452
  457 - 463
  479 - 480
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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