Elongation Factor Tu

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu
  Conformer 1
(PDB)
1aip (A)
  Conformer 2
(PDB)
1ha3 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 191 2.67   95 - 98   217 - 403
2 178 1.93   11 - 94   99 - 216

Sequence


           ________________________________________________________________80______________________________________________________ 
 1aip(A) : ******KPHVNVGTIGHVDHGKTTLTAALTYVTAAENP------------tAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 
         :                                                                                                                          
 1ha3(A) : GEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKtAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 
           ________________________________________________________________80______________________________________________________ 

           ____________________________________________________________________________213_________________________________________ 
 1aip(A) : MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVE 
         :                                                                                                                          
 1ha3(A) : MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVE 
           ____________________________________________________________________________213_________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1aip(A) : IVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVEL 
         :                                                                                                                          
 1ha3(A) : IVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVEL 
           ________________________________________________________________________________________________________________________ 

           _______________________________                                                                                          
 1aip(A) : IKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                                          
         :                                                                                                                          
 1ha3(A) : IKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                                          
           _______________________________                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
98.5
Translation
(A)
-1.1
Closure
(%)
89.9
Bending Residues
( green )
  80 - 99
  213 - 217
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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