Endo-Beta-N-Acetylglucosaminidase F2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Endo-Beta-N-Acetylglucosaminidase F2
  Conformer 1
(PDB)
4nuy (A)
  Conformer 2
(PDB)
4nuz (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 246 0.45   652 - 654   661 - 664   708 - 715   717 - 718   721 - 721   723 - 729   733 - 734   736 - 752   756 - 758   761 - 925   930 - 932   955 - 985
2 601 0.49   104 - 651   655 - 660   665 - 707   716 - 716   719 - 720   722 - 722   730 - 732   735 - 735   753 - 755   759 - 760
3 21 0.4   927 - 929   933 - 948   986 - 987

Sequence


           ________________________________________________________________________________________________________________________ 
 4nuy(A) : ***PEKIPMKPLHGPLYGGYFRTWHDKTSDPTEKDKVNSMGELPKEVDLAFIFHDWTKDYSLFWKELATKHVPKLNKQGTRVIRTIPWRFLAGGDNSGIAEDTSKYPNTPEGNKALAKAI 
         :                                                                                                                          
 4nuz(A) : MKIPEKIPMKPLHGPLYGGYFRTWHDKTSDPTEKDKVNSMGELPKEVDLAFIFHDWTKDYSLFWKELATKHVPKLNKQGTRVIRTIPWRFLAGGDNSGIAEDTSKYPNTPEGNKALAKAI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4nuy(A) : VDEYVYKYNLDGLDVDVEHDSIPKVDKKEDTAGVERSIQVFEEIGKLIGPKGVDKSRLFIMDSTYMADKNPLIERGAPYINLLLVQVYGSQGEKGGWEPVSNRPEKTMEERWQGYSKYIR 
         :                                                                                                                          
 4nuz(A) : VDEYVYKYNLDGLDVQVEHDSIPKVDKKEDTAGVERSIQVFEEIGKLIGPKGVDKSRLFIMDSTYMADKNPLIERGAPYINLLLVQVYGSQGEKGGWEPVSNRPEKTMEERWQGYSKYIR 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4nuy(A) : PEQYMIGFSFYEENAQEGNLWYDINSRKDEDKANGINTDITGTRAERYARWQPKTGGVKGGIFSYAIDRDGVAHQPKKYAK-dATDNIFHSDYSVSKALKTVMLKDKSYDLIDEKDFPDK 
         :                                                                                                                          
 4nuz(A) : PEQYMIGFSFYEENAQEGNLWYDINSRKDEDKANGINTDITGTRAERYARWQPKTGGVKGGIFSYAIDRDGVAHQPKKYAKkDATDNIFHSDYSVSKALKTVMLKDKSYDLIDEKDFPDK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4nuy(A) : ALREAVMAQVGTRKGDLERFNGTLRLDNPAIQSLEGLNKFKKLAQLDLIGLSRITKLDRSVLPANMKPGKDTLETVLETYK----eEPATIPPVSLKVSGLTGLKELDLSGFDRETLAGL 
         :                                                                                                                          
 4nuz(A) : ALREAVMAQVGTRKGDLERFNGTLRLDNPAIQSLEGLNKFKKLAQLDLIGLSRITKLDRSVLPANMKPGKDTLETVLETYKKDNKEEPATIPPVSLKVSGLTGLKELDLSGFDRETLAGL 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________651______660_664_____________________________________ 
 4nuy(A) : DAATLTSLEKVDISGNKLDLAPGTENRQIFDTMLSTISNHVGSNEQTVKFDKQKPTGHYPDTYGKTSLRLPVANEKVDLQSQLLFGTVTNQGTLINSEADYKAYQNHKIAGRSFVDSNYH 
         :                                                                                                                          
 4nuz(A) : DAATLTSLEKVDISGNKLDLAPGTENRQIFDTMLSTISNHVGSNEQTVKFDKQKPTGHYPDTYGKTSLRLPVANEKVDLQSQLLFGTVTNQGTLINSEADYKAYQNHKIAGRSFVDSNYH 
           ___________________________________________________________________651______660_664_____________________________________ 

           ___707_____715___________729____________________752___758_______________________________________________________________ 
 4nuy(A) : YNNFKVSYENYTVKVTDSTLGTTTDKTLATDKEETYKVDFFSPADKTKAVHTAKVIVGDEKTMMVNLAEGATVIGGSADPVNARKVFDGQLGSETDNISLGWDSKQSIIFKLKEDGLIKH 
         :                                                                                                                          
 4nuz(A) : YNNFKVSYENYTVKVTDSTLGTTTDKTLATDKEETYKVDFFSPADKTKAVHTAKVIVGDEKTMMVNLAEGATVIGGSADPVNARKVFDGQLGSETDNISLGWDSKQSIIFKLKEDGLIKH 
           ___707_____715___________729____________________752___758_______________________________________________________________ 

           _____________________________________________________________________________________________________925_929____________ 
 4nuy(A) : WRFFNDSARNPETTNKPIQEASLQIFNIKDYNLDNLLENPNKFDDEKYWITVDTYSAQGERATAFSNTLNNITSKYWRVVFDTKGDRYSSPVVPELQILGYPLPNADTIMKTVTTAKELS 
         :                                                                                                                          
 4nuz(A) : WRFFNDSARNPETTNKPIQEASLQIFNIKDYNLDNLLENPNKFDDEKYWITVDTYSAQGERATAFSNTLNNITSKYWRVVFDTKGDRYSSPVVPELQILGYPLPNADTIMKTVTTAKELS 
           _____________________________________________________________________________________________________925_929____________ 

           ____948__________________________________985____                                                                         
 4nuy(A) : QQKDKFSQKMLDELKIKEMALETSLNSKIFDVTAINANAGVLKDCIEK                                                                         
         :                                                                                                                          
 4nuz(A) : QQKDKFSQKMLDELKIKEMALETSLNSKIFDVTAINANAGVLKDCIEK                                                                         
           ____948__________________________________985____                                                                         

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.4
Translation
(A)
-0.6
Closure
(%)
96.0
Bending Residues
( green )
  651 - 652
  654 - 655
  660 - 661
  664 - 665
  707 - 708
  715 - 723
  729 - 730
  732 - 736
  752 - 753
  755 - 756
  758 - 761
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
6.9
Translation
(A)
-0.1
Closure
(%)
56.2
Bending Residues
( green )
  925 - 927
  929 - 930
  932 - 933
  948 - 955
  985 - 987
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download