Extracellular Calcium-Sensing Receptor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Extracellular Calcium-Sensing Receptor
  Conformer 1
(PDB)
5k5s (A)
  Conformer 2
(PDB)
5k5t (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 196 0.37   192 - 322   490 - 544   554 - 563
2 278 1.09   23 - 189   324 - 482
3 42 0.35   545 - 553   564 - 596

Sequence


           ________________________________________________________________________________________________________________________ 
 5k5s(A) : YGPDQRAQKKGDIILGGLFPIHFGVAAKDQDLKSRPESVECIRYNFRGFRWLQAMIFAIEEINSSPALLPNLTLGYRIFDTCNTVSKALEATLSFVAQNKi----------PSTIAVVGA 
         :                                                                                                                          
 5k5t(A) : *GPDQRAQKKGDIILGGLFPIHFGVAAKDQDLKSRPESVECIRYNFRGFRWLQAMIFAIEEINSSPALLPNLTLGYRIFDTCNTVSKALEATLSFVAQNKIDSLNLDEFCNpSTIAVVGA 
           ________________________________________________________________________________________________________________________ 

           __________________________________________189___________________________________________________________________________ 
 5k5s(A) : TGSGVSTAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTIPNDEHQATAMADIIEYFRWNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQHVVEVIQNSTA 
         :                                                                                                                          
 5k5t(A) : TGSGVSTAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTIPNDEHQATAMADIIEYFRWNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQHVVEVIQNSTA 
           __________________________________________189___________________________________________________________________________ 

           ____________________________________________________319_________________________________________________________________ 
 5k5s(A) : KVIVVFSSGPDLEPLIKEIVRRNITGKIWLASEAWASSSLIAMPQYFHVVGGTIGFALKAGQIPGFREFLKKVHPRKSVHNGFAKEFWEETFNCH------------------------- 
         :                                                                                                                          
 5k5t(A) : KVIVVFSSGPDLEPLIKEIVRRNITGKIWLASEAWASSSLIAMPQYFHVVGGTIGFALKAGQIPGFREFLKKVHPRKSVHNGFAKEFWEETFNCHLQEGAKGPLPVDTFLRGHEESGDRF 
           ____________________________________________________319_________________________________________________________________ 

           _______________________________________________________________________________________________482______________________ 
 5k5s(A) : --------pLCTGDENINSVETPYIDYTHLRISYNVYLAVYSIAHALQDIYTCLPGRGLFTNGSCADIKKVEAWQVLKHLRHLQFTNNMGEQVTFDECGDLVGNYSIINWHLSPEDGSIV 
         :                                                                                                                          
 5k5t(A) : SQSSTAFRPLCTGDENINSVETPYIDYTHLRISYNVYLAVYSIAHALQDIYTCLPGRGLFTNGSCADIKKVEAWQVLKHLRHLNFTNNMGEQVTFDECGDLVGNYSIINWHLSPEDGSIV 
           _______________________________________________________________________________________________482______________________ 

           ____________________________________543_______553_______563________________________________________                      
 5k5s(A) : FKEVGYYNVYAKKGERLFINEEKILWSGFSREVPFSNCSRDCLAGTRKGIIEGEPTCCFECVECPDGEYSDETDASACNKCPDDFWSNENHTSC*****                      
         :                                                                                                                          
 5k5t(A) : FKEVGYYNVYAKKGERLFINEEKILWSGFSREVPFSNCSRDCLAGTRKGIIEGEPTCCFECVECPDGEYSDETDASACNKCPDDFWSNENHTSCIAKEI                      
           ____________________________________543_______553_______563________________________________________                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
29.0
Translation
(A)
-2.0
Closure
(%)
98.5
Bending Residues
( green )
  189 - 195
  319 - 324
  482 - 490
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
12.9
Translation
(A)
-0.2
Closure
(%)
72.6
Bending Residues
( green )
  543 - 545
  553 - 555
  563 - 564
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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