Fab Fragment Of Murine Monoclonal Antibody An02 Complex 3 With Its Hapten (2,2,6,6-Tetramethyl-1-Piperidinyloxy- 4 Dinitrophenyl)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fab Fragment Of Murine Monoclonal Antibody An02 Complex 3 With Its Hapten (2,2,6,6-Tetramethyl-1-Piperidinyloxy- 4 Dinitrophenyl)
  Conformer 1
(PDB)
1baf (L)
  Conformer 2
(PDB)
1acy (L)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 105 0.66   105 - 209
2 101 1.21   3 - 104

Sequence


           __________________________________________________________________________________________________________104___________ 
 1baf(L) : QIVLTQSPAIMSASPGEKVTMTCSASSSV--Y---YMYWYQQKPGSSPRLLIYDTSNLASGVPVRFSGSGSGTSYSLTISRMEAEDAATYYCQQWSSYPPITFGVGTKLELKRADAAPTV 
         :                                                                                                                          
 1acy(L) : DIVMTQSPASLVVSLGQRATISCRASESVDSYGKSFMHWYQQKPGQPPKVLIYIASNLESGVPARFSGSGSRTDFTLTIDPVEADDAATYYCQQNNEDPP-TFGAGTKLEMRRADAAPTV 
           __________________________________________________________________________________________________________104___________ 

           ___________________________________________________________________________________________________                      
 1baf(L) : SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC                      
         :                                                                                                                          
 1acy(L) : SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR***                      
           ___________________________________________________________________________________________________                      

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
24.8
Translation
(A)
0.0
Closure
(%)
90.3
Bending Residues
( green )
  104 - 105
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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