Ferrichrome Abc Transporter Lipoprotein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ferrichrome Abc Transporter Lipoprotein
  Conformer 1
(PDB)
3lhs (A)
  Conformer 2
(PDB)
3li2 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 259 1.02   39 - 199   209 - 229   244 - 320
2 23 2.76   200 - 208   230 - 243

Sequence


           ________________________________________________________________________________________________________________________ 
 3lhs(A) : ASTISVKDENGTVKVPKDAKRIVVLEYSFADALAALDVKPVGIADDGKKKRIIKPVREKIGDYTSVGTRKQPNLEEISKLKPDLIIADSSRHKGINKELNKIAPTLSLKSFDGDYKQNIN 
         :                                                                                                                          
 3li2(A) : ASTISVKDENGTVKVPKDAKRIVVLEYSFADALAALDVKPVGIADDGKKKRIIKPVREKIGDYTSVGTRKQPNLEEISKLKPDLIIADSSRHKGINKELNKIAPTLSLKSFDGDYKQNIN 
           ________________________________________________________________________________________________________________________ 

           _________________________________________199______208__________________229___________243________________________________ 
 3lhs(A) : SFKTIAKALNKEKEGEKRLAEHDKLINKYKDEIKFDRNQKVLPAVVAKAGLLAHPNYSYVGQFLNELGFKNALSDDVTKGLSKYLKGPYLQLDTEHLADLNPERMIIMTDHAKKDSAEFK 
         :                                                                                                                          
 3li2(A) : SFKTIAKALNKEKEGEKRLAEHDKLINKYKDEIKFDRNQKVLPAVVAKAGLLAHPNYSYVGQFLNELGFKNALSDDVTKGLSKYLKGPYLQLDTEHLADLNPERMIIMTDHAKKDSAEFK 
           _________________________________________199______208__________________229___________243________________________________ 

           ___________________________________________________                                                                      
 3lhs(A) : KLQEDATWKKLNAVKNNRVDIVDRDVWARSRGLISSEEMAKELVELSKKEQ                                                                      
         :                                                                                                                          
 3li2(A) : KLQEDATWKKLNAVKNNRVDIVDRDVWARSRGLISSEEMAKELVELSK***                                                                      
           ___________________________________________________                                                                      

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
34.3
Translation
(A)
-0.9
Closure
(%)
99.9
Bending Residues
( green )
  199 - 200
  208 - 209
  229 - 230
  243 - 252
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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