Glucosamine-6-Phosphate Deaminase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glucosamine-6-Phosphate Deaminase
  Conformer 1
(PDB)
1jt9 (A)
  Conformer 2
(PDB)
1dea (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 158 0.53   11 - 135   156 - 199   236 - 236   239 - 239   241 - 245   262 - 262
2 83 0.8   4 - 10   136 - 155   200 - 235   237 - 238   240 - 240   246 - 261   263 - 263

Sequence


           ________10______________________________________________________________________________________________________________ 
 1jt9(A) : MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ 
         :                                                                                                                          
 1dea(A) : MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ 
           ________10______________________________________________________________________________________________________________ 

           ____________135_________________155_________________________________________199_________________________________235_____ 
 1jt9(A) : YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTL-------------------pKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCD 
         :                                                                                                                          
 1dea(A) : YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCD 
           ____________135_________________155_________________________________________199_________________________________235_____ 

           _244______________261_____                                                                                               
 1jt9(A) : EPSTMELKVKTLRYFNELEAENIKGL                                                                                               
         :                                                                                                                          
 1dea(A) : EPSTMELKVKTLRYFNELEAENIKGL                                                                                               
           _244______________261_____                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.0
Translation
(A)
0.0
Closure
(%)
68.1
Bending Residues
( green )
  10 - 11
  135 - 136
  155 - 156
  199 - 200
  235 - 241
  244 - 246
  261 - 263
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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