Glutamate Dehydrogenase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Dehydrogenase 1
  Conformer 1
(PDB)
1l1f (A)
  Conformer 2
(PDB)
1hwx (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 297 1.97   22 - 23   25 - 211   381 - 461   463 - 469   484 - 503
2 195 1.57   12 - 21   24 - 24   212 - 380   462 - 462   470 - 483

Sequence


           _______________21_______________________________________________________________________________________________________ 
 1l1f(A) : *****DPNFFKMVEGFFDRGASIVEDKLVEDLRTRESEEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDV 
         :                                                                                                                          
 1hwx(A) : ADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQTQEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDV 
           _______________17_______________________________________________________________________________________________________ 

           ____________________________________________________________________________________211_________________________________ 
 1l1f(A) : PFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTP 
         :                                                                                                                          
 1hwx(A) : PFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFIENASYMSILGMTP 
           ____________________________________________________________________________________207_________________________________ 

           ________________________________________________________________________________________________________________________ 
 1l1f(A) : GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGFPKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIF 
         :                                                                                                                          
 1hwx(A) : GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPQADKIF 
           ________________________________________________________________________________________________________________________ 

           _____________380______________________________________________________________________________461_____469___________483_ 
 1l1f(A) : LERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTA 
         :                                                                                                                          
 1hwx(A) : LERNIMVIPDLYLNAGGVTVSYFQILKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTA 
           _____________376______________________________________________________________________________457_____465___________479_ 

           _____________________                                                                                                    
 1l1f(A) : AYVNAIEKVFKVYNEAGVTFT                                                                                                    
         :                                                                                                                          
 1hwx(A) : AYVNAIEKVFRVYNEAGVTFT                                                                                                    
           _____________________                                                                                                    

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.8
Translation
(A)
-0.3
Closure
(%)
80.7
Bending Residues
( green )
  21 - 25
  211 - 212
  380 - 381
  461 - 463
  469 - 470
  483 - 484
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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