Glutamate [Nmda] Receptor Subunit Zeta 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate [Nmda] Receptor Subunit Zeta 1
  Conformer 1
(PDB)
1y20 (A)
  Conformer 2
(PDB)
1pbq (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 168 0.75   7 - 144   246 - 287
2 101 0.87   145 - 245

Sequence


           ________________________________________________________________________________________________________________________ 
 1y20(A) : RLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAP 
         :                                                                                                                          
 1pbq(A) : RLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTG------------vPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAP 
           ________________________________________________________________________________________________________________________ 

           _________________144__________________________________________________________________________________________________24 
 1y20(A) : LTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGEL 
         :                                                                                                                          
 1pbq(A) : LTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGEL 
           _________________144__________________________________________________________________________________________________24 

           5______________________________________________                                                                          
 1y20(A) : FFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECD                                                                          
         :                                                                                                                          
 1pbq(A) : FFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQEC*                                                                          
           5______________________________________________                                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
24.4
Translation
(A)
1.3
Closure
(%)
93.1
Bending Residues
( green )
  144 - 145
  245 - 248
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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