Glutamate Receptor Ionotropic, Nmda 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Ionotropic, Nmda 1
  Conformer 1
(PDB) 		4kcc (A)
  Conformer 2
(PDB) 		4nf5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 168 1.0   6 - 145   241 - 243   245 - 284
2 96 0.58   146 - 240   244 - 244

Sequence


           ________________________________________________________________________________________________________________________ 
 4kcc(A) : STRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNhTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERV----kEWNGMMGELLSGQADMIVAPLTINNER 
         :                                                                                                                          
 4nf5(A) : *TRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGP--tVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNsNKKEWNGMMGELLSGQADMIVAPLTINNER 
           ________________________________________________________________________________________________________________________ 

           ___________145____________________________________________________________________________________________240___________ 
 4kcc(A) : AQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFG 
         :                                                                                                                          
 4nf5(A) : AQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFG 
           ___________145____________________________________________________________________________________________240___________ 

           _______________________________________                                                                                  
 4kcc(A) : IGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQEC                                                                                  
         :                                                                                                                          
 4nf5(A) : IGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVR****                                                                                  
           _______________________________________                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		23.5
Translation
(A) 		-0.9
Closure
(%) 		99.7
Bending Residues
( green ) 		  145 - 146
  240 - 248
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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