Glutamate Receptor Ionotropic, Nmda 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Ionotropic, Nmda 1
  Conformer 1
(PDB) 		4nf4 (A)
  Conformer 2
(PDB) 		4nf8 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 175 0.71   6 - 144   243 - 285
2 98 0.79   145 - 242

Sequence


           ________________________________________________________________________________________________________________________ 
 4nf4(A) : *TRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPND---gSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERV--kKEWNGMMGELLSGQADMIVAP 
         :                                                                                                                          
 4nf8(A) : STRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVsNKKEWNGMMGELLSGQADMIVAP 
           ________________________________________________________________________________________________________________________ 

           _________________144______________________________________________________________________________________________241___ 
 4nf4(A) : LTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGEL 
         :                                                                                                                          
 4nf8(A) : LTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGEL 
           _________________144______________________________________________________________________________________________241___ 

           _____________________________________________                                                                            
 4nf4(A) : FFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRY**                                                                            
         :                                                                                                                          
 4nf8(A) : FFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQE                                                                            
           _____________________________________________                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		26.2
Translation
(A) 		1.3
Closure
(%) 		100.0
Bending Residues
( green ) 		  144 - 146
  241 - 247
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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