Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor 2
  Conformer 1
(PDB)
1n0t (A)
  Conformer 2
(PDB)
1wvj (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 158 0.38   7 - 110   196 - 206   217 - 259
2 95 0.39   111 - 195   207 - 216

Sequence


           ___________________________________________________________________________________________________________110__________ 
 1n0t(A) : ****TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP 
         :                                                                                                                          
 1wvj(A) : GANKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP 
           ___________________________________________________________________________________________________________110__________ 

           ______________________________________________________________________193_________205________216________________________ 
 1n0t(A) : IESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLK 
         :                                                                                                                          
 1wvj(A) : IESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLK 
           ______________________________________________________________________193_________205________216________________________ 

           ______________________                                                                                                   
 1n0t(A) : LNEQGLLDKLKNKWWYDKGEC*                                                                                                   
         :                                                                                                                          
 1wvj(A) : LNEQGLLDKLKNKWWYDKGECG                                                                                                   
           ______________________                                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
18.3
Translation
(A)
0.1
Closure
(%)
81.6
Bending Residues
( green )
  110 - 111
  193 - 202
  205 - 208
  216 - 218
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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