Glutamate Receptor, Ionotropic Kainate 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor, Ionotropic Kainate 2
  Conformer 1
(PDB)
1yae (A)
  Conformer 2
(PDB)
2f36 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 157 0.74   434 - 538   740 - 752   761 - 800
2 86 0.61   539 - 739   753 - 760

Sequence


           ___________________________________________________________________________________________________________________538__ 
 1yae(A) : PANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISI 
         :                                                                                                                          
 2f36(A) : ***********TLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQND-KGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISI 
           ___________________________________________________________________________________________________________________110__ 

           ___________________________________________________________________________738___________752___758______________________ 
 1yae(A) : LYRK---iDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITI 
         :                                                                                                                          
 2f36(A) : LYRKGTPIDSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITI 
           ___________________________________________________________________________190___________204___210______________________ 

           __________________________                                                                                               
 1yae(A) : AILQLQEEGKLHMMKEKWWRGNGC**                                                                                               
         :                                                                                                                          
 2f36(A) : AILQLQEEGKLHMMKEKWWRGNGCPS                                                                                               
           __________________________                                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.0
Translation
(A)
0.3
Closure
(%)
93.5
Bending Residues
( green )
  538 - 539
  738 - 740
  752 - 753
  758 - 762
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download