Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor, Ionotropic Kainate 1
  Conformer 1
(PDB)
3fv2 (A)
  Conformer 2
(PDB)
1vso (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 138 0.59   420 - 522   746 - 785
2 101 0.86   523 - 745   786 - 786

Sequence


           ________________________________________________________________________________________________________521_____________ 
 3fv2(A) : ANRTLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKGTPID 
         :                                                                                                                          
 1vso(A) : ***TLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQ-----wNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKGTPID 
           ________________________________________________________________________________________________________108_____________ 

           ________________________________________________________________________________________745_____________________________ 
 3fv2(A) : SADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQTALVRNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEG 
         :                                                                                                                          
 1vso(A) : SADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSS---sALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEG 
           ________________________________________________________________________________________212_____________________________ 

           ______783_______                                                                                                         
 3fv2(A) : KLHMMKEKWWRGNGCP                                                                                                         
         :                                                                                                                          
 1vso(A) : KLHMMKEKWWRGNG**                                                                                                         
           ______250_______                                                                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
29.9
Translation
(A)
-0.1
Closure
(%)
99.2
Bending Residues
( green )
  521 - 523
  745 - 747
  783 - 786
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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