Alcohol Dehydrogenase (Holo Form) (E.C.1.1.1.1)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alcohol Dehydrogenase (Holo Form) (E.C.1.1.1.1)
  Conformer 1
(PDB)
8adh  
  Conformer 2
(PDB)
1axg (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 229 0.91   3 - 170   173 - 176   297 - 300   319 - 367   369 - 372
2 138 0.53   171 - 172   177 - 293   301 - 318   368 - 368

Sequence


           ________________________________________________________________________________________________________________________ 
 8adh    : STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 
         :                                                                                                                          
 1axg(B) : STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________170___176________________________________________________________________ 
 8adh    : GTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATEC 
         :                                                                                                                          
 1axg(B) : GTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATEC 
           _______________________________________________170___176________________________________________________________________ 

           ________________________________________________291________________________318__________________________________________ 
 8adh    : VNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFD 
         :                                                                                                                          
 1axg(B) : VNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFD 
           ________________________________________________291________________________318__________________________________________ 

           ____367_______                                                                                                           
 8adh    : LLRSGESIRTILTF                                                                                                           
         :                                                                                                                          
 1axg(B) : LLRSGESIRTILTF                                                                                                           
           ____367_______                                                                                                           

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.0
Translation
(A)
-0.1
Closure
(%)
95.3
Bending Residues
( green )
  170 - 173
  176 - 177
  291 - 301
  318 - 319
  367 - 369
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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