3-Phosphoglycerate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Phosphoglycerate Kinase
  Conformer 1
(PDB)
13pk (A)
  Conformer 2
(PDB)
1hdi (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 201 4.43   9 - 202   390 - 394   397 - 415
2 188 1.8   203 - 389   395 - 396

Sequence


           ________________________________________________________________________________________________________________________ 
 13pk(A) : EKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGG-SCVLMSHLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLNAADVVSKM 
         :                                                                                                                          
 1hdi(A) : NKLTLDKLNVKGKRVVMRVDFNVPMAAAQITNNARIKAAVPSIKFCLDDGAKSVVLMSHLGRPDGSPM------------P---DKYSLQPVAAELKSALGKAVLFLKDCVGPAVEKACA 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________202____________________________ 
 13pk(A) : SP--GDVVLLENVRFY-KEEGS-KKAKDREAM---AKI------LASYGDVYISDAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNM 
         :                                                                                                                          
 1hdi(A) : DPAAGSVILLENLRFHVEEEGKGKDASGNKAAGEPAKIKAFRASLSALGDVYVNDAFGTAHRAHSSMVGVN--LPKKAGAFLMKKELNYFAAAAESPERPFLAILGGAKVADKIQLINNM 
           _________________________________________________________________________________________198____________________________ 

           ________________________________________________________________________________________________________________________ 
 13pk(A) : LQRIDYLLIGGAMAYTFLKA-QGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEF-KAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVP 
         :                                                                                                                          
 1hdi(A) : LDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKKIVKNLMSKAAANGVKITLPVDFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKYSEAVARAKQIVWNGPVGVFEWEA 
           ________________________________________________________________________________________________________________________ 

           ______________________________________389__394_________________________                                                  
 13pk(A) : YSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLDDK                                                  
         :                                                                                                                          
 1hdi(A) : FAQGTKALMDEVVKATSR-GCITIIGGGDTATCCAKWNTEDNVSHVSTGGGASLELLEGKVLPGVDALSNV                                                  
           ______________________________________386__391_________________________                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
26.2
Translation
(A)
-1.1
Closure
(%)
76.7
Bending Residues
( green )
  202 - 203
  389 - 390
  394 - 397
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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