Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20)
  Conformer 1
(PDB) 		3app  
  Conformer 2
(PDB) 		2wea (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 293 0.26   5 - 236   248 - 273   275 - 275   286 - 319
2 22 0.36   237 - 247   274 - 274   276 - 285

Sequence


           ________________________________________________________________________________________________________________________ 
 3app    : AASGVATNTPTANDEEYITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDG 
         :                                                                                                                          
 2wea(A) : AASGVATNTPTANDEEYITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDG 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________________________________236____ 
 3app    : LLGLAFSSINTVQPQSQTTFFDTVKSSLAQPLFAVALKHQQPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDS 
         :                                                                                                                          
 2wea(A) : LLGLAFSSINTVQPQSQTTFFDTVKSSLAQPLFAVALKHQQPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDS 
           _________________________________________________________________________________________________________________236____ 

           ____247_______________________273_________285______________________________________                                      
 3app    : NAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA                                      
         :                                                                                                                          
 2wea(A) : NAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA                                      
           ____247_______________________273_________285______________________________________                                      

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.4
Translation
(A) 		-0.2
Closure
(%) 		84.6
Bending Residues
( green ) 		  236 - 237
  247 - 248
  273 - 276
  285 - 286
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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