Acid-Sensing Ion Channel 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acid-Sensing Ion Channel 1
  Conformer 1
(PDB)
4fz0 (A)
  Conformer 2
(PDB)
3hgc (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 355 0.88   68 - 422
2 21 1.21   55 - 67   423 - 430

Sequence


           ____________________67__________________________________________________________________________________________________ 
 4fz0(A) : ****CFMGSLALLALVCTNRIQYYFLYPHVTKLDEVAATRLTFPAVTFCNLNEFRFSRVTKNDLYHAGELLALLNNRYEIPDTQTADEKQLEILQDKANFRNFKPKPFNMLEFYDRAGHD 
         :                                                                                                                          
 3hgc(A) : VWALCFMGSLALLALVCTNRIQYYFLYPHVTKLDEVAATRLTFPAVTFCNLNEFRFSRVTKNDLYHAGELLALLNNRYEIPDTQTADEKQLEILQDKANFRNFKPKPFNMLEFYDRAGHD 
           ____________________67__________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4fz0(A) : IREMLLSCFFRGEQCSPEDFKVVFTRYGKCYTFNAGQDGKPRLITMKGGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPLIDQLGFGVAPGFQTFVSCQEQRLIYLP 
         :                                                                                                                          
 3hgc(A) : IREMLLSCFFRGEQCSPEDFKVVFTRYGKCYTFNAGQDGKPRLITMKGGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPLIDQLGFGVAPGFQTFVSCQEQRLIYLP 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4fz0(A) : PPWGDCKATTGDSEFYDTYSITACRIDCETRYLVENCNCRMVHMPGDAPYCTPEQYKECADPALDFLVEKDNEYCVCEMPCNVTRYGKELSMVKIPSKASAKYLAKKYNKSEQYIGENIL 
         :                                                                                                                          
 3hgc(A) : PPWGDCKATTGDSEFYDTYSITACRIDCETRYLVENCNCRMVHMPGDAPYCTPEQYKECADPALDFLVEKDNEYCVCEMPCNVTRYGKELSMVKIPSKASAKYLAKKYNKSEQYIGENIL 
           ________________________________________________________________________________________________________________________ 

           _________417_____________________________________                                                                        
 4fz0(A) : VLDIFFEALNYETIEQKKAYEVAGLLGDIGGQMGLFIGASILTVLELFD                                                                        
         :                                                                                                                          
 3hgc(A) : VLDIFFEALNYETIEQKKAYEVAGLLGDIGGQMGLFIGASILTVLE***                                                                        
           _________417_____________________________________                                                                        

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.3
Translation
(A)
0.3
Closure
(%)
88.7
Bending Residues
( green )
  67 - 77
  417 - 423
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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