Actin-Related Protein 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin-Related Protein 3
  Conformer 1
(PDB)
1k8k (A)
  Conformer 2
(PDB)
2p9u (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 219 0.39   7 - 165   177 - 180   190 - 191   303 - 304   307 - 309   314 - 317   339 - 351   364 - 366   368 - 372   379 - 414
2 173 0.58   166 - 176   181 - 189   192 - 302   305 - 306   310 - 313   318 - 338   352 - 363   367 - 367   373 - 378

Sequence


           ________________________________________________________________________________________________________________________ 
 1k8k(A) : GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKEvMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFES 
         :                                                                                                                          
 2p9u(A) : GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKEvMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFES 
           ________________________________________________________________________________________________________________________ 

           _____________________________165________176_180______189________________________________________________________________ 
 1k8k(A) : FNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWI 
         :                                                                                                                          
 2p9u(A) : FNVPGLYIAVQAVLALAASWTS-qVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWI 
           _____________________________165________176_180______189________________________________________________________________ 

           ______________________________________________302____309_313_317__________________338__________351_____363______372___37 
 1k8k(A) : KQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSkPKPIDVQVITHHMQRYAV 
         :                                                                                                                          
 2p9u(A) : KQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSkPKPIDVQVITHHMQRYAV 
           ______________________________________________302____309_313_317__________________338__________351_____363______372___37 

           8________________________________________                                                                                
 1k8k(A) : WFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGVMS                                                                                
         :                                                                                                                          
 2p9u(A) : WFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGV**                                                                                
           8________________________________________                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.2
Translation
(A)
0.1
Closure
(%)
88.0
Bending Residues
( green )
  165 - 166
  176 - 177
  180 - 181
  189 - 192
  302 - 307
  309 - 310
  313 - 314
  317 - 318
  338 - 339
  351 - 353
  363 - 364
  366 - 368
  372 - 373
  378 - 379
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download