Actin, Cytoplasmic 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin, Cytoplasmic 1
  Conformer 1
(PDB)
3ub5 (A)
  Conformer 2
(PDB)
3chw (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 203 0.53   21 - 21   104 - 104   109 - 110   146 - 163   166 - 168   173 - 350
2 152 0.61   8 - 20   22 - 103   105 - 108   111 - 145   164 - 165   169 - 172   351 - 373

Sequence


           ______________20________________________________________________________________________________103__108________________ 
 3ub5(A) : *AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 
         :                                                                                                                          
 3chw(A) : VQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH----------dSYVGDEAQSKRGILTLKYPIE-gIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 
           ______________20________________________________________________________________________________103__108________________ 

           __________________145_______________163__168_172________________________________________________________________________ 
 3ub5(A) : ETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPD 
         :                                                                                                                          
 3chw(A) : ETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPD 
           __________________145_______________163__168_172________________________________________________________________________ 

           _______________________________________________________________________________________________________350______________ 
 3ub5(A) : GQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 
         :                                                                                                                          
 3chw(A) : GQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDE 
           _______________________________________________________________________________________________________350______________ 

           ___________                                                                                                              
 3ub5(A) : SGPSIVHRKCF                                                                                                              
         :                                                                                                                          
 3chw(A) : SGPSIVHRKCF                                                                                                              
           ___________                                                                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.0
Translation
(A)
-0.4
Closure
(%)
99.9
Bending Residues
( green )
  20 - 22
  103 - 105
  108 - 111
  145 - 146
  163 - 166
  168 - 169
  172 - 173
  350 - 351
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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