Allophanate Hydrolase Subunit 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Allophanate Hydrolase Subunit 1
  Conformer 1
(PDB)
3mml (B)
  Conformer 2
(PDB)
3mml (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 127 0.28   78 - 207
2 75 1.22   3 - 77

Sequence


           ______________________________________________________________________72________________________________________________ 
 3mml(B) : STLGTVHNYGDQALLLEFDSTAEVLAWTETLREAELLGVVDIVPAARTVLVKLAGPRYQAPTRQRLGKLRVRPEAITHQPPGDRVDVTIDVVYDGADLHEVASLTGtPAQVIAAHTGTPW 
         :                                                                                                                          
 3mml(D) : STLGTVHNYGDQALLLEFDSTAEVLAWTETLREAELLGVVDIVPAARTVLVKLAGPRYQAPTRQRLGKLRVRPEAITHQPPGDRVDVTIDVVYDGADLHEVASLTGtPAQVIAAHTGTPW 
           ______________________________________________________________________72________________________________________________ 

           _______________________________________________________________________________________                                  
 3mml(B) : RVGFCGFAPGFAYLVDGDARLQVPRRAEPRTSVPAGAVALAGEFSGVYPRQSPGGWQLIGHTDAVfDVNRDKPALLTPGwVQFRAVG                                  
         :                                                                                                                          
 3mml(D) : RVGFCGFAPGFAYLVDGDARLQVPRRAEPRTSVPAGAVALAGEFSGVYPRQSPGGWQLIGHTDAVfDVNRDKPALLTPGwVQFRAV*                                  
           _______________________________________________________________________________________                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.6
Translation
(A)
-0.5
Closure
(%)
87.5
Bending Residues
( green )
  72 - 87
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

Download and extract PyMOL PML script file Download