Amylomaltase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Amylomaltase
  Conformer 1
(PDB)
1cwy (A)
  Conformer 2
(PDB)
2owx (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 413 0.52   4 - 216   219 - 225   280 - 294   317 - 347   349 - 497
2 79 0.7   217 - 218   226 - 279   295 - 316   348 - 348

Sequence


           ________________________________________________________________________________________________________________________ 
 1cwy(A) : MELPRAFGLLLHPTSLPGPYGVGVLGREARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGNPYLIDLRPLAERGYVRLEDPGFPQGRVDYGLLYAWKWPALKEAFRGFKEKAS 
         :                                                                                                                          
 2owx(A) : MELPRAFGLLLHPTSLPGPYGVGVLGQEARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGNPYLIDLRPLAERGYVRLEDPGFPQGRVDYGLLYAWKWPALKEAFRGFKEKAS 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________216______225_______________ 
 1cwy(A) : PEEREAFAAFREREAWWLEDYALFMALKGAHGGLPWNRWPLPLRKREEKALREAKSALAEEVAFHAFTQWLFFRQWGALKAEAEALGIRIIGDMPIFVAEDSAEVWAHPEWFHLDEEGRP 
         :                                                                                                                          
 2owx(A) : PEEREAFAAFREREAWWLEDYALFMALKGAHGGLPWNRWPLPLRKREEKALREAKSALAEEVAFHAFTQWLFFRQWGALKAEAEALGIRIIGDMPIFVAEDSAEVWAHPEWFHLDEEGRP 
           _____________________________________________________________________________________________216______225_______________ 

           _________________________________276_______________294___________________316____________________________347_____________ 
 1cwy(A) : TVVAGVPPDYFSETGQRWGNPLYRWDVLEREGFSFWIRRLEKALELFHLVRIDHFRGFEAYWEIPASCPTAVEGRWVKAPGEKLFQKIQEVFGEVPVLAEDLGVITPEVEALRDRFGLPG 
         :                                                                                                                          
 2owx(A) : TVVAGVPPDYFSETGQRWGNPLYRWDVLEREGFSFWIRRLEKALELFHLVRIDHFRGFEAYWEIPASCPTAVEGRWVKAPGEKLFQKIQEVFGEVPVLAEDLGVITPEVEALRDRFGLPG 
           _________________________________276_______________294___________________316____________________________347_____________ 

           ________________________________________________________________________________________________________________________ 
 1cwy(A) : MKVLQFAFDDGMENPFLPHNYPAHGRVVVYTGTHDNDTTLGWYRTATPHEKAFMARYLADWGITFREEEEVPWALMHLGMKSVARLAVYPVQDVLALGSEARMNYPGRPSGNWAWRLLPG 
         :                                                                                                                          
 2owx(A) : MKVLQFAFD--mENPFLPHNYPAHGRVVVYTGTHDNDTTLGWYRTATPHEKAFMARYLADWGITFREEEEVPWALMHLGMKSVARLAVYPVQDVLALGSEARMNYPGRPSGNWAWRLLPG 
           ________________________________________________________________________________________________________________________ 

           ____________________                                                                                                     
 1cwy(A) : ELSPEHGARLRAMAEATERL                                                                                                     
         :                                                                                                                          
 2owx(A) : ELSPEHGARLRAMAEATERL                                                                                                     
           ____________________                                                                                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.1
Translation
(A)
0.0
Closure
(%)
95.1
Bending Residues
( green )
  216 - 219
  225 - 226
  276 - 281
  294 - 295
  316 - 317
  347 - 349
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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