Aspartate Carbamoyltransferase (Aspartate Transcarbamylase) 3 (R State) (E.C.2.1.3.2)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartate Carbamoyltransferase (Aspartate Transcarbamylase) 3 (R State) (E.C.2.1.3.2)
  Conformer 1
(PDB)
8atc (D)
  Conformer 2
(PDB)
5at1 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 93 0.86   10 - 101   151 - 151
2 49 0.5   102 - 150

Sequence


           ___________________________________________________________________________________________101__________________________ 
 8atc(D) : GVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSFAV 
         :                                                                                                                          
 5at1(D) : GVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPERIDNVLVCPNSNCISHAEPVSSSFAV 
           ___________________________________________________________________________________________101__________________________ 

           ___________________149____                                                                                               
 8atc(D) : RKRANDIALKCKYCEKEFSHNVVLAN                                                                                               
         :                                                                                                                          
 5at1(D) : RKRANDIALKCKYCEKEFSHNVVLAN                                                                                               
           ___________________149____                                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.6
Translation
(A)
0.5
Closure
(%)
8.6
Bending Residues
( green )
  101 - 102
  149 - 151
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download