B-Raf Proto-Oncogene Serine/threonine-Protein Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name B-Raf Proto-Oncogene Serine/threonine-Protein Kinase
  Conformer 1
(PDB)
1uwh (A)
  Conformer 2
(PDB)
1uwh (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 147 0.08   449 - 595
2 106 0.08   615 - 720

Sequence


           ________________________________________________________________________________________________________________________ 
 1uwh(A) : DDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYL 
         :                                                                                                                          
 1uwh(B) : DDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYL 
           ________________________________________________________________________________________________________________________ 

           __________________________595___________________________________________________________________________________________ 
 1uwh(A) : HAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVlSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKK 
         :                                                                                                                          
 1uwh(B) : HAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVlSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKK 
           __________________________595___________________________________________________________________________________________ 

           ________________________                                                                                                 
 1uwh(A) : KRDERPLFPQILASIELLARSLPK                                                                                                 
         :                                                                                                                          
 1uwh(B) : KRDERPLFPQILASIELLARSLPK                                                                                                 
           ________________________                                                                                                 

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.7
Translation
(A)
-0.1
Closure
(%)
42.1
Bending Residues
( green )
  595 - 617
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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