Calpain 2, Large [Catalytic] Subunit Precursor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calpain 2, Large [Catalytic] Subunit Precursor
  Conformer 1
(PDB)
1u5i (A)
  Conformer 2
(PDB)
2ary (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 183 2.3   25 - 96   98 - 106   110 - 211
2 82 1.94   97 - 97   107 - 109   212 - 342

Sequence


           ____________________________________________________________________________________________95________106_______________ 
 1u5i(A) : AGIAMKLATDREAAEGLGSHERAIKYLNQDYETLRNECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRPTEICADPQFIIGGATRTDICQGALGDSWLLAAIASLTLNEEIL 
         :                                                                                                                          
 2ary(A) : *********************NAIKYLGQDYEQLRVRCLQSGTLFRDEAFPPVPQSLGYKDLGPNSSKTYGIKWKRPTELLSNPQFIVDGATRTDICQGALGDCWLLAAIASLTLNDTLL 
           ___________________________________________________________________________________________105________116_______________ 

           _______________________________________________________________________________________211______________________________ 
 1u5i(A) : ARVVPLDQSFQENYAGIFHFQFWQYGEWVEVVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELRKPPPNLFKIIQKALEKGSLLGCS 
         :                                                                                                                          
 2ary(A) : HRVVPHGQSFQNGYAGIFHFQLWQFGEWVDVVVDDLLPIKDGKLVFVHSAEGNEFWSALLEKAYAKVNGSYEALSGGSTSEGFEDFTGGVTEWYELRKAPSDLYQIILKALERGSLLGCS 
           _______________________________________________________________________________________221______________________________ 

           ________________________________________________________________________________________________________________________ 
 1u5i(A) : IDI----------------gHAYSVTGAEEVq------KLIRIRNPWGQ-------------------------------gEFWMSFSDFLRHYSRLEICNLTPDTLTCDSYKKWKLTKM 
         :                                                                                                                          
 2ary(A) : IDISSVLDMEAITFKKLVKGHAYSVTGAKQVNYRGQVVSLIRMRNPWGEVEWTGAWSDSSSEWNNVDPYERDQLRVKMEDGEFWMSFRDFMREFTRLEICNLT***************** 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1u5i(A) : DGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRKMGEDMHTIGFGIYEVsKNFFLTeRSDTFINLREVLNRFKLPPGEYVLVPSTFEPHKNGDF 
         :                                                                                                                          
 2ary(A) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1u5i(A) : CIRVFSEKKADYQTVDDEIEANIEEIANEEDIGDGFRRLFAQLAGEDAEISAFELQTILRRVLAKkSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTM 
         :                                                                                                                          
 2ary(A) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________                                           
 1u5i(A) : NSYEMRKALEEAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQLDLISWLSFSVL                                           
         :                                                                                                                          
 2ary(A) : ******************************************************************************                                           
           ______________________________________________________________________________                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.9
Translation
(A)
0.0
Closure
(%)
52.5
Bending Residues
( green )
  95 - 98
  106 - 110
  211 - 212
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download