Capsid Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Capsid Protein
  Conformer 1
(PDB)
1ihm (A)
  Conformer 2
(PDB)
1ihm (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 406 0.61   1035 - 1071   1086 - 1111   1123 - 1125   1157 - 1179   1202 - 1518
2 82 0.8   1031 - 1034   1072 - 1085   1112 - 1122   1126 - 1156   1180 - 1201

Sequence


           _____________________1034_________________________________1071__________1085_____________________1110________1122_______ 
 1ihm(A) : *******************DPLAMDPVAGSSTAVATAGQVNPIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLSLGPHLNPFLLHLSQMYNGWVGNMRVRIMLAGNAFTAGKIIVSCIP 
         :                                                                                                                          
 1ihm(B) : SSVDGASGAGQLVPEVNASDPLAMDPVAGSSTAVATAGQVNPIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLSLGPHLNPFLLHLSQMYNGWVGNMRVRIMLAGNAFTAGKIIVSCIP 
           _____________________2034_________________________________2071__________2085_____________________2110________2122_______ 

           _______________________1156____________1172_________________________1201________________________________________________ 
 1ihm(A) : PGFGSHNLTIAQATLFPHVIADVRTLDPIEVPLEDVRNVLFHNNDRNQQTMRLVCMLYTPLRTGGGTGDSFVVAGRVMTCPSPDFNFLFLVPPTVEQKTRPFTLPNLPLSSLSNSRAPLP 
         :                                                                                                                          
 1ihm(B) : PGFGSHNLTIAQATLFPHVIADVRTLDPIEVPLEDVRNVLFHNNDRNQQTMRLVCMLYTPLRTGGGTGDSFVVAGRVMTCPSPDFNFLFLVPPTVEQKTRPFTLPNLPLSSLSNSRAPLP 
           _______________________2156____________2172_________________________2201________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ihm(A) : ISSMGISPDNVQSVQFQNGRCTLDGRLVGTTPVSLSHVAKIRGTSNGTVINLTELDGTPFHPFEGPAPIGFPDLGGCDWHINMTQFGHSSQTQYDVDTTPDTFVPHLGSIQANGIGSGNY 
         :                                                                                                                          
 1ihm(B) : ISSMGISPDNVQSVQFQNGRCTLDGRLVGTTPVSLSHVAKIRGTSNGTVINLTELDGTPFHPFEGPAPIGFPDLGGCDWHINMTQFGHSSQTQYDVDTTPDTFVPHLGSIQANGIGSGNY 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ihm(A) : VGVLSWISPPSHPSGSQVDLWKIPNYGSSITEATHLAPSVYPPGFGEVLVFFMSKMPGPGAYNLPCLLPQEYISHLASEQAPTVGEAALLHYVDPDTGRNLGEFKAYPDGFLTCVPNGAS 
         :                                                                                                                          
 1ihm(B) : VGVLSWISPPSHPSGSQVDLWKIPNYGSSITEATHLAPSVYPPGFGEVLVFFMSKMPGPGAYNLPCLLPQEYISHLASEQAPTVGEAALLHYVDPDTGRNLGEFKAYPDGFLTCVPNGAS 
           ________________________________________________________________________________________________________________________ 

           _______________________________                                                                                          
 1ihm(A) : SGPQQLPINGVFVFVSWVSRFYQLKPVGTAS                                                                                          
         :                                                                                                                          
 1ihm(B) : SGPQQLPINGVFVFVSWVSRFYQLKPVGTAS                                                                                          
           _______________________________                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.2
Translation
(A)
0.5
Closure
(%)
82.2
Bending Residues
( green )
  1034 - 1044
  1071 - 1072
  1085 - 1086
  1110 - 1119
  1122 - 1123
  1125 - 1126
  1156 - 1158
  1172 - 1180
  1201 - 1202
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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